{ "_id": "6a1037f9acfb0bcc41c9a906", "Package": "MGDrivE", "Type": "Package", "Title": "Mosquito Gene Drive Explorer", "Version": "1.6.2", "Authors@R": "c(\nperson(\"Héctor Manuel\", \"Sánchez Castellanos\", email = \"sanchez.hmsc@berkeley.edu\", role = c(\"aut\",\"cre\")),\nperson(\"Jared\", \"Bennett\", email = \"jared_bennett@berkeley.edu \", role = \"aut\"),\nperson(\"Sean\", \"Wu\", email = \"slwu89@berkeley.edu\", role = \"aut\"),\nperson(\"John M.\", \"Marshall\", email = \"john.marshall@berkeley.edu\", role = \"aut\")\n)", "Maintainer": "Héctor Manuel Sánchez Castellanos\n", "URL": "https://marshalllab.github.io/MGDrivE/,\nhttps://www.marshalllab.com/,\nhttps://marshalllab.github.io/MGDrivE/docs_v1", "BugReports": "https://github.com/MarshallLab/MGDrivE/issues", "Description": "Provides a model designed to be a reliable testbed where\nvarious gene drive interventions for mosquito-borne diseases\ncontrol. It is being developed to accommodate the use of\nvarious mosquito-specific gene drive systems within a\npopulation dynamics framework that allows migration of\nindividuals between patches in landscape. Previous work\ndeveloping the population dynamics can be found in Deredec et\nal. (2001) and Hancock & Godfray\n(2007) , and extensions to\naccommodate CRISPR homing dynamics in Marshall et al. (2017)\n.", "License": "GPL-3", "Encoding": "UTF-8", "RdMacros": "Rdpack", "ByteCompile": "true", "LazyData": "true", "RoxygenNote": "7.3.2", "Roxygen": "list(markdown = TRUE, r6 = FALSE)", "VignetteBuilder": "knitr", "Repository": "https://marshalllab.r-universe.dev", "Date/Publication": "2025-09-14 02:14:25 UTC", "RemoteUrl": "https://github.com/marshalllab/mgdrive", "RemoteRef": "HEAD", "RemoteSha": "f7ec820e8a6b0f4fa5697b190f6cb0b1d2d02311", "RemoteSubdir": "MGDrivE", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-12 06:02:18 UTC", "User": "root" }, "Author": "Héctor Manuel Sánchez Castellanos [aut, cre],\nJared Bennett [aut],\nSean Wu [aut],\nJohn M. Marshall [aut]", "MD5sum": "20af34be398fe4c2a73c0c8bc594d78d", "_user": "marshalllab", "_type": "src", "_file": "MGDrivE_1.6.2.tar.gz", "_fileid": "cb3c2ccf828a1c087bd4b097ebcfdedcd98f850e8ce8cb227a26d481a10b14d7", "_filesize": 9990324, "_sha256": "cb3c2ccf828a1c087bd4b097ebcfdedcd98f850e8ce8cb227a26d481a10b14d7", "_created": "2026-05-12T06:02:18.000Z", "_published": "2026-05-22T11:03:21.552Z", "_distro": "noble", "_jobs": [ { "job": 77366800718, "time": 229, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "6936877277" }, { "job": 77366801101, "time": 219, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "6936876590" }, { "job": 77366801360, "time": 223, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "6936876218" }, { "job": 77366800634, "time": 199, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "6936870363" }, { "job": 77366801301, "time": 179, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "6936861322" }, { "job": 77366801146, "time": 518, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "6936941178" }, { "job": 77366801000, "time": 208, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "6936864610" }, { "job": 77366800974, "time": 553, "config": "macos-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "6936937581" }, { "job": 77366800901, "time": 320, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "6936824107" }, { "job": 77366800307, "time": 114, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7158945714" }, { "job": 77366800893, "time": 216, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "6936874587" }, { "job": 77366800744, "time": 207, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "6936872284" }, { "job": 77366801022, "time": 206, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "6936871867" } ], "_buildurl": "https://github.com/r-universe/marshalllab/actions/runs/25716387143", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/marshalllab/mgdrive", "_commit": { "id": "f7ec820e8a6b0f4fa5697b190f6cb0b1d2d02311", "author": "slwu89 <10673535+slwu89@users.noreply.github.com>", "committer": "slwu89 <10673535+slwu89@users.noreply.github.com>", "message": "minor fix to 2.1.1\n", "time": 1757816065 }, "_maintainer": { "name": "Héctor Manuel Sánchez Castellanos", "email": "sanchez.hmsc@berkeley.edu", "login": "chipdelmal", "twitter": "@chipdelmal", "uuid": 684756 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10", "role": "Depends" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "R6", "role": "Imports" }, { "package": "Rcpp", "role": "Imports" }, { "package": "Rdpack", "version": ">= 0.7", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "markdown", "role": "Suggests" } ], "_owner": "marshalllab", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-35", "n": 1 }, { "week": "2025-36", "n": 1 }, { "week": "2025-37", "n": 2 } ], "_tags": [], "_stars": 8, "_contributors": [ { "user": "gilchrist19", "count": 49, "uuid": 23705161 }, { "user": "chipdelmal", "count": 43, "uuid": 684756 }, { "user": "slwu89", "count": 18, "uuid": 10673535 }, { "user": "marshalllab", "count": 1, "uuid": 16087894 } ], "_userbio": { "uuid": 16087894, "type": "user", "name": "Marshall Lab", "description": "Our research is focused on: 1) genetics-based strategies to control mosquito-borne diseases, and 2) mathematical models to support vector-borne disease control." }, "_downloads": { "count": 521, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/MGDrivE" }, "_mentions": 7, "_devurl": "https://github.com/marshalllab/mgdrive", "_pkgdown": "https://marshalllab.github.io/MGDrivE/docs_v1", "_searchresults": 96, "_topics": [ "cpp" ], "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/MGDrivE.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/marshalllab/mgdrive", "_realowner": "marshalllab", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2019-07-12" }, { "version": "1.1.0", "date": "2019-08-19" }, { "version": "1.5.0", "date": "2020-01-30" }, { "version": "1.6.0", "date": "2020-10-05" }, { "version": "1.6.2", "date": "2025-09-05" } ], "_exports": [ "aggregateFemales", "aggregateOutput", "basicBatchMigration", "calcCos", "calcExpKernel", "calcGammaKernel", "calcHaversine", "calcHurdleExpKernel", "calcLognormalKernel", "calcOmega", "calcQuantiles", "calcVinEll", "calcVinSph", "calcZeroInflation", "cube2csv", "cubeAlleleSail", "cubeASmidler", "cubeCLEAVRMF", "cubeCLEAVRX", "cubeClvR", "cubeClvR2", "cubeConfinableHoming", "cubeConfinableHomingJOHN", "cubeConfinableHomingX", "cubeECHACR", "cubeECHACRX", "cubeHoming1RA", "cubeHomingDrive", "cubeHomingDriveSM", "cubeImmunizingReversalMF", "cubeImmunizingReversalX", "cubeKillerRescue", "cubeMEDEA", "cubeMendelian", "cubeOneLocusTA", "cubeReciprocalTranslocations", "cubeRIDL", "cubeSplitDrive", "cubeSplitDriveX", "cubeSplitDriveY", "cubeTGD", "cubeTGDX", "cubeTwoLocusTA", "cubeWolbachia", "cubeXHomingDeposition", "cubeXShredderMF", "cubeXShredderY", "eraseDirectory", "generateReleaseVector", "Network", "parameterizeMGDrivE", "plotMGDrivEMult", "plotMGDrivESingle", "retrieveOutput", "setupMGDrivE", "splitOutput" ], "_datasets": [ { "name": "kernels", "title": "Kernels Parameters", "object": "kernels", "class": [ "list" ], "fields": [], "table": true, "tojson": true }, { "name": "moveMatAll2", "title": "Movement Matrix: All 2", "object": "moveMatAll2", "class": [ "matrix", "array" ], "fields": {}, "rows": 3, "table": true, "tojson": true }, { "name": "moveMatCascade3", "title": "Movement Matrix: Cascade 3", "object": "moveMatCascade3", "class": [ "matrix", "array" ], "fields": {}, "rows": 3, "table": true, "tojson": true }, { "name": "moveMatDiag", "title": "Movement Matrix: Diagonal", "object": "moveMatDiag", "class": [ "matrix", "array" ], "fields": {}, "rows": 3, "table": true, "tojson": true }, { "name": "moveMatDiagOneCity", "title": "Movement Matrix: Diagonal One City", "object": "moveMatDiagOneCity", "class": [ "matrix", "array" ], "fields": {}, "rows": 1, "table": true, "tojson": true }, { "name": "moveMatDie", "title": "Movement Matrix: Die", "object": "moveMatDie", "class": [ "matrix", "array" ], "fields": {}, "rows": 3, "table": true, "tojson": true }, { "name": "moveMatIndependent3", "title": "Movement Matrix: Independent 3", "object": "moveMatIndependent3", "class": [ "matrix", "array" ], "fields": {}, "rows": 3, "table": true, "tojson": true }, { "name": "moveMatMixedSpil", "title": "Movement Matrix: Mixed Spill", "object": "moveMatMixedSpil", "class": [ "matrix", "array" ], "fields": {}, "rows": 3, "table": true, "tojson": true }, { "name": "moveMatTaleOfTwoCities", "title": "Movement Matrix: Tale of Two Cities", "object": "moveMatTaleOfTwoCities", "class": [ "matrix", "array" ], "fields": {}, "rows": 2, "table": true, "tojson": true }, { "name": "moveMatTriDiagonal", "title": "Movement Matrix: Tri-diagonal", "object": "moveMatTriDiagonal", "class": [ "matrix", "array" ], "fields": [ "1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12" ], "rows": 12, "table": true, "tojson": true }, { "name": "moveMatTriple", "title": "Movement Matrix: Triple", "object": "moveMatTriple", "class": [ "matrix", "array" ], "fields": {}, "rows": 3, "table": true, "tojson": true } ], "_help": [ { "page": "aggregateFemales", "title": "Aggregate Female Output by Genotype", "topics": [ "aggregateFemales" ] }, { "page": "aggregateOutput", "title": "Aggregate Output Over Landscape", "topics": [ "aggregateOutput" ] }, { "page": "basicBatchMigration", "title": "Make List of Batch Migration Parameters", "topics": [ "basicBatchMigration" ] }, { "page": "calcCos", "title": "Calculate Geodesic Distance - Cosine Method", "topics": [ "calcCos" ] }, { "page": "calcExpKernel", "title": "Calculate Exponential Stochastic Matrix", "topics": [ "calcExpKernel" ] }, { "page": "calcGammaKernel", "title": "Calculate Gamma Stochastic Matrix", "topics": [ "calcGammaKernel" ] }, { "page": "calcHaversine", "title": "Calculate Geodesic Distance - Haversine Method", "topics": [ "calcHaversine" ] }, { "page": "calcHurdleExpKernel", "title": "Calculate Zero-inflated Exponential Stochastic Matrix", "topics": [ "calcHurdleExpKernel" ] }, { "page": "calcLognormalKernel", "title": "Calculate Lognormal Stochastic Matrix", "topics": [ "calcLognormalKernel" ] }, { "page": "calcOmega", "title": "Solve for Omega (additional genotype-specific mortality)", "topics": [ "calcOmega" ] }, { "page": "calcQuantiles", "title": "Summary Statistics for Stochastic MGDrivE", "topics": [ "calcQuantiles" ] }, { "page": "calcVinEll", "title": "Calculate Geodesic Distance - Vincenty Ellipsoid Method", "topics": [ "calcVinEll" ] }, { "page": "calcVinSph", "title": "Calculate Geodesic Distance - Vincenty Sphere Method", "topics": [ "calcVinSph" ] }, { "page": "calcZeroInflation", "title": "Calculates the zero-inflation part of a hurdle exponential kernel.", "topics": [ "calcZeroInflation" ] }, { "page": "cube2csv", "title": "Export a Cube to .csv", "topics": [ "cube2csv" ] }, { "page": "cubeAlleleSail", "title": "Inheritance Cube: 3-Piece Allele Sail", "topics": [ "cubeAlleleSail" ] }, { "page": "cubeASmidler", "title": "Inheritance Cube: Split-Drive for Andrea Smidler", "topics": [ "cubeASmidler" ] }, { "page": "cubeCLEAVRMF", "title": "Inheritance Cube: CLEAVR - Cleave and Rescue", "topics": [ "cubeCLEAVRMF" ] }, { "page": "cubeCLEAVRX", "title": "Inheritance Cube: CLEAVR - Cleave and Rescue", "topics": [ "cubeCLEAVRX" ] }, { "page": "cubeClvR", "title": "Inheritance Cube: ClvR (Cleave and Rescue)", "topics": [ "cubeClvR" ] }, { "page": "cubeClvR2", "title": "Inheritance Cube: 2-Locus ClvR (Cleave and Rescue)", "topics": [ "cubeClvR2" ] }, { "page": "cubeConfinableHoming", "title": "Inheritance Cube: Confinable Homing", "topics": [ "cubeConfinableHoming" ] }, { "page": "cubeConfinableHomingJOHN", "title": "Inheritance Cube: Confinable Homing Drive, John", "topics": [ "cubeConfinableHomingJOHN" ] }, { "page": "cubeConfinableHomingX", "title": "Inheritance Cube: Confinable Homing, X-Linked", "topics": [ "cubeConfinableHomingX" ] }, { "page": "cubeECHACR", "title": "Inheritance Cube: ECHACR", "topics": [ "cubeECHACR" ] }, { "page": "cubeECHACRX", "title": "Inheritance Cube: ECHACRX", "topics": [ "cubeECHACRX" ] }, { "page": "cubeHoming1RA", "title": "Inheritance Cube: Homing Drive with 1 Resistance Allele", "topics": [ "cubeHoming1RA" ] }, { "page": "cubeHomingDrive", "title": "Inheritance Cube: CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) with 2 Resistance Alleles and maternal deposition", "topics": [ "cubeHomingDrive" ] }, { "page": "cubeHomingDriveSM", "title": "Inheritance Cube: CRISPR-SM (Clustered Regularly Interspaced Short Palindromic Repeats) with Small-Molecule Induction and 1 Resistance Allele and Maternal Deposition", "topics": [ "cubeHomingDriveSM" ] }, { "page": "cubeImmunizingReversalMF", "title": "Inheritance Cube: Immunizing Reversal/Basic Reversal", "topics": [ "cubeImmunizingReversalMF" ] }, { "page": "cubeImmunizingReversalX", "title": "Inheritance Cube: Immunizing Reversal", "topics": [ "cubeImmunizingReversalX" ] }, { "page": "cubeKillerRescue", "title": "Inheritance Cube: Killer-Rescue System", "topics": [ "cubeKillerRescue" ] }, { "page": "cubeMEDEA", "title": "Inheritance Cube: MEDEA (Maternal Effect Dominant Embryonic Arrest)", "topics": [ "cubeMEDEA" ] }, { "page": "cubeMendelian", "title": "Inheritance Cube: Mendelian", "topics": [ "cubeMendelian" ] }, { "page": "cubeOneLocusTA", "title": "Inheritance Cube: 1 Locus Maternal-Toxin/Zygotic-Antidote System", "topics": [ "cubeOneLocusTA" ] }, { "page": "cubeReciprocalTranslocations", "title": "Inheritance Cube: Reciprocal Translocation", "topics": [ "cubeReciprocalTranslocations" ] }, { "page": "cubeRIDL", "title": "Inheritance Cube: RIDL (Release of Insects with Dominant Lethality)", "topics": [ "cubeRIDL" ] }, { "page": "cubeSplitDrive", "title": "Inheritance Cube: Split CRISPR Drive with 2 Resistance Alleles and male/female specific homing", "topics": [ "cubeSplitDrive" ] }, { "page": "cubeSplitDriveX", "title": "Inheritance Cube: X-linked Split CRISPR Drive with 2 Resistance Alleles and male/female specific homing", "topics": [ "cubeSplitDriveX" ] }, { "page": "cubeSplitDriveY", "title": "Inheritance Cube: Y-linked Split CRISPR Drive with 2 Resistance Alleles", "topics": [ "cubeSplitDriveY" ] }, { "page": "cubeTGD", "title": "Inheritance Cube: tGD", "topics": [ "cubeTGD" ] }, { "page": "cubeTGDX", "title": "Inheritance Cube: tGDX", "topics": [ "cubeTGDX" ] }, { "page": "cubeTwoLocusTA", "title": "Inheritance Cube: 2 Locus Maternal-Toxin/Zygotic-Antidote System", "topics": [ "cubeTwoLocusTA" ] }, { "page": "cubeWolbachia", "title": "Inheritance Cube: Wolbachia", "topics": [ "cubeWolbachia" ] }, { "page": "cubeXHomingDeposition", "title": "Inheritance Cube: CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) X-linked with 2 Resistance Allele and Maternal Deposition", "topics": [ "cubeXHomingDeposition" ] }, { "page": "cubeXShredderMF", "title": "Inheritance Cube: Autosomal X-Shredder", "topics": [ "cubeXShredderMF" ] }, { "page": "cubeXShredderY", "title": "Inheritance Cube: Y-Linked X-Shredder", "topics": [ "cubeXShredderY" ] }, { "page": "eraseDirectory", "title": "Erase all files in a directory", "topics": [ "eraseDirectory" ] }, { "page": "generateReleaseVector", "title": "Make List of Modified Mosquito Releases", "topics": [ "generateReleaseVector" ] }, { "page": "kernels", "title": "Kernels Parameters", "topics": [ "kernels" ] }, { "page": "MGDrivE", "title": "MGDrivE: Mosquito Gene Drive Explorer", "topics": [ "MGDrivE" ] }, { "page": "MGDrivE-Cube", "title": "MGDrivE: Inheritance Cube", "topics": [ "MGDrivE-Cube" ] }, { "page": "MGDrivE-Model", "title": "MGDrivE: Model's Mathematical Description", "topics": [ "MGDrivE-Model" ] }, { "page": "moveMatAll2", "title": "Movement Matrix: All 2", "topics": [ "moveMatAll2" ] }, { "page": "moveMatCascade3", "title": "Movement Matrix: Cascade 3", "topics": [ "moveMatCascade3" ] }, { "page": "moveMatDiag", "title": "Movement Matrix: Diagonal", "topics": [ "moveMatDiag" ] }, { "page": "moveMatDiagOneCity", "title": "Movement Matrix: Diagonal One City", "topics": [ "moveMatDiagOneCity" ] }, { "page": "moveMatDie", "title": "Movement Matrix: Die", "topics": [ "moveMatDie" ] }, { "page": "moveMatIndependent3", "title": "Movement Matrix: Independent 3", "topics": [ "moveMatIndependent3" ] }, { "page": "moveMatMixedSpil", "title": "Movement Matrix: Mixed Spill", "topics": [ "moveMatMixedSpil" ] }, { "page": "moveMatTaleOfTwoCities", "title": "Movement Matrix: Tale of Two Cities", "topics": [ "moveMatTaleOfTwoCities" ] }, { "page": "moveMatTriDiagonal", "title": "Movement Matrix: Tri-diagonal", "topics": [ "moveMatTriDiagonal" ] }, { "page": "moveMatTriple", "title": "Movement Matrix: Triple", "topics": [ "moveMatTriple" ] }, { "page": "multRun_Network", "title": "Run Simulation", "topics": [ "multRun_Network" ] }, { "page": "Network", "title": "Network Class Definition", "topics": [ "Network" ] }, { "page": "oneRun_Network", "title": "Run Simulation", "topics": [ "oneRun_Network" ] }, { "page": "parameterizeMGDrivE", "title": "parameterizeMGDrivE", "topics": [ "parameterizeMGDrivE" ] }, { "page": "Patch", "title": "Patch Class Definition", "topics": [ "Patch" ] }, { "page": "plotMGDrivEMult", "title": "Plot", "topics": [ "plotMGDrivEMult" ] }, { "page": "plotMGDrivESingle", "title": "Plot", "topics": [ "plotMGDrivESingle" ] }, { "page": "reset_Network", "title": "Reset Network", "topics": [ "reset_Network" ] }, { "page": "retrieveOutput", "title": "Retrieve Output", "topics": [ "retrieveOutput" ] }, { "page": "setupMGDrivE", "title": "Setup MGDrivE", "topics": [ "setupMGDrivE" ] }, { "page": "splitOutput", "title": "Split Output by Patch", "topics": [ "splitOutput" ] } ], "_readme": "https://github.com/marshalllab/mgdrive/raw/HEAD/MGDrivE/README.md", "_rundeps": [ "R6", "rbibutils", "Rcpp", "Rdpack" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_vignettes": [ { "source": "mgdrive_examples.Rmd", "filename": "mgdrive_examples.html", "title": "MGDrivE Examples", "engine": "knitr::rmarkdown", "headings": [ "Landscape Setup", "Single Population", "Two Populations", "n Populations", "Realistic Location", "Inheritance Simulations", "Mendelian Inheritance Simulations, Single Population", "Deterministic", "Deterministic, With Fitness Cost", "Stochastic", "Mendelian Inheritance Simulations, Two Populations", "Deterministic, No Migration", "Deterministic, Small Migration", "Stochastic, Small Migration", "Stochastic, Small Migration and Fitness Cost", "Reciprocal Translocation Gene Drive Simulations, One Population", "Deterministic, Below Threshold", "Deterministic, Above Threshold", "Stochastic, \"Above\" Threshold" ], "created": "2019-08-02 20:22:21", "modified": "2025-08-27 21:20:06", "commits": 5 }, { "source": "mgdrive_math.Rmd", "filename": "mgdrive_math.html", "title": "MGDrivE Mathematical Description", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Brief Description", "Previous Work:", "Notation and Conventions", "Mathematical Framework", "Inheritance Cube", "Drive-specific Cubes", "Population Dynamics", "Larval Stages", "Adult Stages", "Gene Drive Releases and Effects", "Migration", "Stochasticity", "Mosquito Biology", "References" ], "created": "2019-08-02 20:22:21", "modified": "2025-08-27 21:20:06", "commits": 6 }, { "source": "mgdrive_run.Rmd", "filename": "mgdrive_run.html", "title": "MGDrivE Run Example", "engine": "knitr::rmarkdown", "headings": [ "MGDrivE, One Run", "Mendelian Inheritance, Stochastic, Multiple Populations", "Full Code", "Load Libraries", "Setup Folder Directory", "Simulation Parameters", "Inheritance Pattern", "Releases", "Setup and Run", "Post Processing", "Plotting" ], "created": "2019-08-02 20:22:21", "modified": "2025-08-27 21:20:06", "commits": 4 } ], "_score": 7.860793028540775, "_indexed": true, "_nocasepkg": "mgdrive", "_universes": [ "marshalllab", "chipdelmal" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.6.2", "date": "2026-05-12T06:05:25.000Z", "distro": "noble", "arch": "aarch64", "commit": "f7ec820e8a6b0f4fa5697b190f6cb0b1d2d02311", "fileid": "83f5ad85545e463a2812f662dd6169d70bc6c18f909c4b7b79b3101f0706715c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/marshalllab/actions/runs/25716387143" }, { "r": "4.7.0", "os": "linux", "version": "1.6.2", "date": "2026-05-12T06:05:26.000Z", "distro": "noble", "arch": "x86_64", "commit": "f7ec820e8a6b0f4fa5697b190f6cb0b1d2d02311", "fileid": "2473352e1617b8b299ecf9286411a60e055601460ff0a3649b07eb26df0106c5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/marshalllab/actions/runs/25716387143" }, { "r": "4.6.0", "os": "linux", "version": "1.6.2", "date": "2026-05-12T06:05:22.000Z", "distro": "noble", "arch": "aarch64", "commit": "f7ec820e8a6b0f4fa5697b190f6cb0b1d2d02311", "fileid": "51a84cdaf85d093daaf757df23f53403ce567ded9234c6808e84fdef224226c6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/marshalllab/actions/runs/25716387143" }, { "r": "4.6.0", "os": "linux", "version": "1.6.2", "date": "2026-05-12T06:05:13.000Z", "distro": "noble", "arch": "x86_64", "commit": "f7ec820e8a6b0f4fa5697b190f6cb0b1d2d02311", "fileid": "383b67e9ddc149bd0d8aa0cc58a27972194bc41105fa0f0f969a1693daaa0188", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/marshalllab/actions/runs/25716387143" }, { "r": "4.5.3", "os": "mac", "version": "1.6.2", "date": "2026-05-12T06:05:13.000Z", "arch": "aarch64", "commit": "f7ec820e8a6b0f4fa5697b190f6cb0b1d2d02311", "fileid": "0ffd9a3e5b610f720709e2f3e3c40d6d59aee7ec0544b3221d98f1c59ca1f22c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/marshalllab/actions/runs/25716387143" }, { "r": "4.5.3", "os": "mac", "version": "1.6.2", "date": "2026-05-12T06:07:45.000Z", "arch": "x86_64", "commit": "f7ec820e8a6b0f4fa5697b190f6cb0b1d2d02311", "fileid": "070ffd5e0a4bb6558f621026603e31c3f8b597c6a39dfdf5b8d6e3ffd24a6baa", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/marshalllab/actions/runs/25716387143" }, { "r": "4.6.0", "os": "mac", "version": "1.6.2", "date": "2026-05-12T06:05:07.000Z", "arch": "aarch64", "commit": "f7ec820e8a6b0f4fa5697b190f6cb0b1d2d02311", "fileid": "f2c759f01cb7458215670059f77291a8d55437573dfeaafc835760a06a357ac4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/marshalllab/actions/runs/25716387143" }, { "r": "4.6.0", "os": "mac", "version": "1.6.2", "date": "2026-05-12T06:07:14.000Z", "arch": "x86_64", "commit": "f7ec820e8a6b0f4fa5697b190f6cb0b1d2d02311", "fileid": "fcd423c59f1988e50e76b2e4dbbc10b6ab2a9144d6bd68ed269a0b8321eb2939", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/marshalllab/actions/runs/25716387143" }, { "r": "4.7.0", "os": "win", "version": "1.6.2", "date": "2026-05-12T06:04:44.000Z", "arch": "x86_64", "commit": "f7ec820e8a6b0f4fa5697b190f6cb0b1d2d02311", "fileid": "f90975e71bf0646377ac17c17e6c3e343407ca68d4f8dafde38471ebea85803e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/marshalllab/actions/runs/25716387143" }, { "r": "4.5.3", "os": "win", "version": "1.6.2", "date": "2026-05-12T06:04:27.000Z", "arch": "x86_64", "commit": "f7ec820e8a6b0f4fa5697b190f6cb0b1d2d02311", "fileid": "ef1ab5dcf9f6b24b58867a303b8b85e4ed2dcdcee578ad3909a5ac49212c51f2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/marshalllab/actions/runs/25716387143" }, { "r": "4.6.0", "os": "win", "version": "1.6.2", "date": "2026-05-12T06:04:28.000Z", "arch": "x86_64", "commit": "f7ec820e8a6b0f4fa5697b190f6cb0b1d2d02311", "fileid": "b6eeed2e3a3f1a5679c74867ab9f1efa0ba01a13c6c2d9a604821cc3e54cace3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/marshalllab/actions/runs/25716387143" }, { "r": "4.6.0", "os": "wasm", "version": "1.6.2", "date": "2026-05-22T11:02:53.000Z", "arch": "emscripten", "commit": "f7ec820e8a6b0f4fa5697b190f6cb0b1d2d02311", "fileid": "41c2c1797d4da00f679c0dcbe9bd96c354c2917526df342c58e913376da06523", "status": "success", "buildurl": "https://github.com/r-universe/marshalllab/actions/runs/25716387143" } ] }