Package: MGDrivE2 1.0.1

Sean L. Wu

MGDrivE2: Mosquito Gene Drive Explorer 2

A simulation modeling framework which significantly extends capabilities from the 'MGDrivE' simulation package via a new mathematical and computational framework based on stochastic Petri nets. For more information about 'MGDrivE', see our publication: <https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/2041-210X.13318>. Some of the notable capabilities of 'MGDrivE2' include: incorporation of human populations, epidemiological dynamics, time-varying parameters, and a continuous-time simulation framework with various sampling algorithms for both deterministic and stochastic interpretations. 'MGDrivE2' relies on the genetic inheritance structures provided in package 'MGDrivE', so we suggest installing that package initially.

Authors:Sean L. Wu [aut, cre], Jared B. Bennett [aut], Héctor Manuel Sánchez Castellanos [ctb], Tomás M. León [ctb], Andrew J. Dolgert [ctb], John M. Marshall [aut]

MGDrivE2_1.0.1.tar.gz
MGDrivE2_1.0.1.zip(r-4.5)MGDrivE2_1.0.1.zip(r-4.4)MGDrivE2_1.0.1.zip(r-4.3)
MGDrivE2_1.0.1.tgz(r-4.4-any)MGDrivE2_1.0.1.tgz(r-4.3-any)
MGDrivE2_1.0.1.tar.gz(r-4.5-noble)MGDrivE2_1.0.1.tar.gz(r-4.4-noble)
MGDrivE2_1.0.1.tgz(r-4.4-emscripten)MGDrivE2_1.0.1.tgz(r-4.3-emscripten)
MGDrivE2.pdf |MGDrivE2.html✨
MGDrivE2/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/marshalllab/mgdrive/issues

On CRAN:

36 exports 3 stars 1.40 score 3 dependencies 1 mentions 30 scripts 266 downloads

Last updated 4 years agofrom:bcd714a107. Checks:OK: 3 NOTE: 4. Indexed: yes.

Exports:calc_move_rateequilibrium_lifeycleequilibrium_SEI_SEIRequilibrium_SEI_SISmovement_prob2ratesim_trajectory_CSVsim_trajectory_Rsolve_muAquasplit_aggregate_CSVspn_hazardsspn_P_epiSEIR_networkspn_P_epiSEIR_nodespn_P_epiSIS_networkspn_P_epiSIS_nodespn_P_lifecycle_networkspn_P_lifecycle_nodespn_Sspn_T_epiSEIR_networkspn_T_epiSEIR_nodespn_T_epiSIS_networkspn_T_epiSIS_nodespn_T_lifecycle_networkspn_T_lifecycle_nodesummarize_eggs_genosummarize_eggs_stagesummarize_femalessummarize_females_episummarize_humans_epiSEIRsummarize_humans_epiSISsummarize_larvae_genosummarize_larvae_stagesummarize_malessummarize_pupae_genosummarize_pupae_stagesummarize_stats_CSVtrack_hinf

Dependencies:deSolvelatticeMatrix